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Environmental conditions are dynamic, and plants respond to those dynamics on multiple time scales. Disequilibrium occurs when a response occurs more slowly than the driving environmental changes. We review evidence regarding disequilibrium in plant distributions, including their responses to paleoclimate changes, recent climate change and new species introductions. There is strong evidence that plant species distributions are often in some disequilibrium with their environmental conditions.This disequilibrium poses a challenge when projecting future species distributions using species distribution models (SDMs). Classically, SDMs assume that the set of species occurrences is an unbiased sample of the suitable environmental conditions. However, a species in disequilibrium with the environment may have higher‐than‐expected occurrence probabilities (e.g. due to extinction debts) or lower‐than‐expected occurrence probabilities (e.g. due to dispersal limitation) in different areas. If unaccounted for, this will lead to biased estimates of the environmental suitability.We review methods for avoiding such biases in SDMs, ranging from simple thinning of the occurrence dataset to complex dynamic and process‐based models. Such models require large data inputs, natural history knowledge and technical expertise, so implementing them can be challenging. Despite this, we advocate for their increased use, since process‐based models provide the best potential to account for biases in model training data and to then represent the dynamics of species occupancy as ranges shift.Synthesis. Occurrence records for a species are often in disequilibrium with climate. SDMs trained on such data will produce biased estimates of a species' niche unless this disequilibrium is addressed in the modelling. A range of tools, spanning a wide gradient of complexity and realism, can resolve this bias.more » « lessFree, publicly-accessible full text available April 1, 2026
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Abstract Climate change is exposing marine species to unsuitable temperatures while also creating new thermally suitable habitats of varying persistence. However, understanding how these different dynamics will unfold over time remains limited. We use yearly sea surface temperature projections to estimate temporal dynamics of thermal exposure (when temperature exceeds realised species’ thermal limits) and opportunity (when temperature at a previously unsuitable site becomes suitable) for 21,696 marine species globally until 2100. Thermal opportunities are projected to arise earlier and accumulate gradually, especially in temperate and polar regions. Thermal exposure increases later and occurs more abruptly, mainly in the tropics. Assemblages tend to show either high exposure or high opportunity, but seldom both. Strong emissions reductions reduce exposure around 100-fold whereas reductions in opportunities are halved. Globally, opportunities are projected to emerge faster than exposure until mid-century when exposure increases more rapidly under a high emissions scenario. Moreover, across emissions and dispersal scenarios, 76%-97% of opportunities are projected to persist until 2100. These results indicate thermal opportunities could be a major source of marine biodiversity change, especially in the near- and mid-term. Our work provides a framework for predicting where and when thermal changes will occur to guide monitoring efforts.more » « less
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Abstract Droughts are a natural hazard of growing concern as they are projected to increase in frequency and severity for many regions of the world. The identification of droughts and their future characteristics is essential to building an understanding of the geography and magnitude of potential drought change trajectories, which in turn is critical information to manage drought resilience across multiple sectors and disciplines. Adding to this effort, we developed a dataset of global historical and projected future drought indices over the 1980–2100 period based on downscaled CMIP6 models across multiple shared socioeconomic pathways (SSP). The dataset is composed of two indices: the Standardized Precipitation Index (SPI) and Standardized Precipitation Evapotranspiration Index (SPEI) for 23 downscaled global climate models (GCMs) (0.25-degree resolution), including historical (1980–2014) and future projections (2015–2100) under four climate scenarios: SSP1-2.6, SSP2-4.5, SSP3-7.0, and SSP5-8.5. The drought indices were calculated for 3-, 6- and 12-month accumulation timescales and are available as gridded spatial datasets in a regular latitude-longitude format at monthly time resolution.more » « less
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Abstract. Wildfire is a critical ecological disturbance in terrestrial ecosystems. Australia, in particular, has experienced increasingly large and severe wildfires over the past 2 decades, while globally fire risk is expected to increase significantly due to projected increases in extreme weather and drought conditions. Therefore, understanding and predicting fire severity is critical for evaluating current and future impacts of wildfires on ecosystems. Here, we first introduce a vegetation-type-specific fire severity classification applied to satellite imagery, which is further used to predict fire severity during the fire season (November to March) using antecedent drought conditions, fire weather (i.e. wind speed, air temperature, and atmospheric humidity), and topography. Compared to fire severity maps from the fire extent and severity mapping (FESM) dataset, we find that fire severity prediction results using the vegetation-type-specific thresholds show good performance in extreme- and high-severity classification, with accuracies of 0.64 and 0.76, respectively. Based on a “leave-one-out” cross-validation experiment, we demonstrate high accuracy for both the fire severity classification and the regression using a suite of performance metrics: the determination coefficient (R2), mean absolute error (MAE), and root-mean-square error (RMSE), which are 0.89, 0.05, and 0.07, respectively. Our results also show that the fire severity prediction results using the vegetation-type-specific thresholds could better capture the spatial patterns of fire severity and have the potential to be applicable for seasonal fire severity forecasts due to the availability of seasonal forecasts of the predictor variables.more » « less
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Abstract AimSpecies occurrence data are valuable information that enables one to estimate geographical distributions, characterize niches and their evolution, and guide spatial conservation planning. Rapid increases in species occurrence data stem from increasing digitization and aggregation efforts, and citizen science initiatives. However, persistent quality issues in occurrence data can impact the accuracy of scientific findings, underscoring the importance of filtering erroneous occurrence records in biodiversity analyses. InnovationWe introduce an R package, occTest, that synthesizes a growing open‐source ecosystem of biodiversity cleaning workflows to prepare occurrence data for different modelling applications. It offers a structured set of algorithms to identify potential problems with species occurrence records by employing a hierarchical organization of multiple tests. The workflow has a hierarchical structure organized in testPhases(i.e. cleaning vs. testing)that encompass different testBlocksgrouping differenttestTypes(e.g.environmental outlier detection), which may use differenttestMethods(e.g.Rosner test, jacknife,etc.). Four differenttestBlockscharacterize potential problems in geographic, environmental, human influence and temporal dimensions. Filtering and plotting functions are incorporated to facilitate the interpretation of tests. We provide examples with different data sources, with default and user‐defined parameters. Compared to other available tools and workflows, occTest offers a comprehensive suite of integrated tests, and allows multiple methods associated with each test to explore consensus among data cleaning methods. It uniquely incorporates both coordinate accuracy analysis and environmental analysis of occurrence records. Furthermore, it provides a hierarchical structure to incorporate future tests yet to be developed. Main conclusionsoccTest will help users understand the quality and quantity of data available before the start of data analysis, while also enabling users to filter data using either predefined rules or custom‐built rules. As a result, occTest can better assess each record's appropriateness for its intended application.more » « less
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Abstract Predictions of biodiversity trajectories under climate change are crucial in order to act effectively in maintaining the diversity of species. In many ecological applications, future predictions are made under various global warming scenarios, as described by a range of different climate models. We propose a clustering methodology to synthesize and interpret the outputs of these various predictions.We propose an interpretable and flexible two‐step methodology to measure the similarity between predicted species range maps and to cluster the future scenario predictions utilizing a spectral clustering technique. We implement and provide code for this method.We find that clustering based on predicted species range maps is mainly driven by the amount of warming rather than climate model or future scenario. We contrast this with clustering based only on predicted climate variables, which is driven primarily by climate models, that is, scenarios of the same climate model are clustered together, even when the amount of warming input to the models is varied.The differences between species‐based and climate‐based clusterings illustrate that it is crucial to incorporate ecological information to understand the relevant differences between climate models. Our findings can be used to better synthesize forecasts of biodiversity change under the wide spectrum of results that emerge when considering potential future scenarios.more » « less
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Abstract Trees are pivotal to global biodiversity and nature’s contributions to people, yet accelerating global changes threaten global tree diversity, making accurate species extinction risk assessments necessary. To identify species that require expert-based re-evaluation, we assess exposure to change in six anthropogenic threats over the last two decades for 32,090 tree species. We estimated that over half (54.2%) of the assessed species have been exposed to increasing threats. Only 8.7% of these species are considered threatened by the IUCN Red List, whereas they include more than half of the Data Deficient species (57.8%). These findings suggest a substantial underestimation of threats and associated extinction risk for tree species in current assessments. We also map hotspots of tree species exposed to rapidly changing threats around the world. Our data-driven approach can strengthen the efforts going into expert-based IUCN Red List assessments by facilitating prioritization among species for re-evaluation, allowing for more efficient conservation efforts.more » « less
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Romanach, Stephanie S. (Ed.)Massive biological databases of species occurrences, or georeferenced locations where a species has been observed, are essential inputs for modeling present and future species distributions. Location accuracy is often assessed by determining whether the observation geocoordinates fall within the boundaries of the declared political divisions. This otherwise simple validation is complicated by the difficulty of matching political division names to the correct geospatial object. Spelling errors, abbreviations, alternative codes, and synonyms in multiple languages present daunting name disambiguation challenges. The inability to resolve political division names reduces usable data, and analysis of erroneous observations can lead to flawed results. Here, we present the Geographic Name Resolution Service (GNRS), an application for correcting, standardizing, and indexing world political division names. The GNRS resolves political division names against a reference database that combines names and codes from GeoNames with geospatial object identifiers from the Global Administrative Areas Database (GADM). In a trial resolution of political division names extracted from >270 million species occurrences, only 1.9%, representing just 6% of occurrences, matched exactly to GADM political divisions in their original form. The GNRS was able to resolve, completely or in part, 92% of the remaining 378,568 political division names, or 86% of the full biodiversity occurrence dataset. In assessing geocoordinate accuracy for >239 million species occurrences, resolution of political divisions by the GNRS enabled the detection of an order of magnitude more errors and an order of magnitude more error-free occurrences. By providing a novel solution to a significant data quality impediment, the GNRS liberates a tremendous amount of biodiversity data for quantitative biodiversity research. The GNRS runs as a web service and is accessible via an API, an R package, and a web-based graphical user interface. Its modular architecture is easily integrated into existing data validation workflows.more » « less
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